Publications 2018

Scientific articles        

650

Ivarsson, M., Bengtson, S., Drake, H., Francis, W. (2018) Fungi in deep subsurface environments. In: Gadd, G. Advances in Applied Microbiology 102: 83-116, doi.org/10.1016/bs.aambs.2017.11.001 (online 12.17) 01.18

651

á Norđi G, Glud RN, Simonsen K, Gaard E (2018) Deposition and benthic mineralization of organic carbon: A seasonal study from Faroe Islands. Journal of Marine Systems 177: 53-61. DOI:10.1016/j.jmarsys.2016.09.005 (online 09.16) (01.18)

652

Maltby J, Steinle L, Löscher CR, Bange HW, Fischer MA, Schmidt M, Treude T (2018) Microbial methanogenesis in the sulfate-reducing zone of sediments in the Eckernförde Bay, SW Baltic Sea. Biogeosciences 15:137-157. https://doi.org/10.5194/bg-15-137-2018. (01.18)

653

Lutterbeck HE, Arevalo-Martinez DL, Löscher CR, Bange HW (2018) Nitric oxide (NO) in the oxygen minimum zone off Peru. Deep-Sea Research Part II, 10-JAN-2018. DOI:10.1016/j.dsr2.2017.12.023 (01.18)

654

Hammarlund EU, von Stedingk K, Påhlman S (2018) Refined control of cell stemness allowed animal evolution in the oxic realm. Nature Ecology & Evolution Perspective. https://doi.org/10.1038/s41559-017-0410-5 (online Jan 18)

655

Marzocchi U, Thamdrup B, Stief P, Glud RN (2018) Effects of settled diatom aggregates on benthic nitrogen cycling. Limnol Oceanogr 63:431-444. DOI: 10.1002/lno.10641c (01.18)

656

Sjøgaard KS, Valdemarsen TB, Treusch A (2018) Responses to an agricultural soil microbiome to flooding with seawater after managed coastal realignment. Microorganisms 6:E12 (01.18) OA

657

Drake, H., Ivarsson, M. (2018). The role of anaerobic fungi in fundamental biogeochemical cycles in the deep biosphere. Fungal Biology Reviews 32: 20-25. (01.18) OA

658

Orsi WD, Richards TA, Francis WR (2018) Predicted microbial secretomes and their target substrates in marine sediment. Nature microbiology 3. DOI: 10.1038/s41564-017-0047-9 (01.18)

659

Mills DB, Francis WR, Vargas S, Larsen M, Elemans CPH, Canfield DE, Worheide G (2018) The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments. ELIFE 7: e31176. DOI: 10.7554/eLife.31176 (02.18)

660

Lowery CM, Leckie RM, Bryant R, Elderbak K, Parker A, Polyak DE, Schmidt M, Snoeyenbos-West O, Sterzinar E (2018) The late Cretaceous Western interior seaway as a model for oxygenation change in epicontinental restricted basins. Earth-Science Reviews 177: 545-564 (02.18)

661

Lessin G, Artioli Y, Almroth-Rosell E, Blackford JC, Dale AW, Glud RN, Middelburg JJ, Pastres R, Queirós AM, Rabouille C, Regnier P, Soetaert K, Solidoro C, Stephens N, Yakushev E (2018) Modelling marine sediment biogeochemistry: Current knowledge gaps, challenges, and some methodological advice for advancement. Frontiers in Marine Science 5:19. DOI: 10.3389/fmars.2018.00019 (02.18)

662

Sallstedt T, Bengtson S, Broman C, Crill PM, Canfield DE (2018) Evidence of oxygenic phototrophy in ancient phosphatic stromatolites from the Paleoproterozoic Vindhyan and Aravalli Supergroups, India. Geobiology 16: 139-159 DOI: 10.1111/gbi.12274  (03.18)

663

Luo M, Glud RN, Pan B, Wenzhöfer, Xu Y, Lin G, Chen D (2018) Benthic carbon mineralization in Hadal Trenches: Insights from in situ determination of benthic oxygen consumption. Geophysical Research Letters DOI: 10.1002/2017GL076232 (03.18)

664

Holmes DE, Orelana R, Giloteaux L, Wang L-Y, Shrestha P, Williams K, Lovley DR, Rotaru A-E (2018) Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation. Microb. Ecol. https://doi.org/10.1007/s00248-018-1165-5 (online March 2)

665

Roland FAE, Darchambeau F, Borges AV, Morana C, De Brabandere L, Thamdrup B, Crowe SA (2018) Denitrification, anaerobic ammonium oxidation, and dissimilatory nitrate reduction to ammonium in an East African Great Lake (Lake Kivu). Limnology and Oceanography 63: 687-701 DOI: 10.1002/lno.10660 (03.18)

666

Ivarsson M, Bach W, Broman C, Neubeck A, Bengtson S (2018) Fossilized life in subseafloor ultramafic rocks. Geomicrobiology Journal 35: 460-467 (posted online Sep 17) (03.18)

667

Canfield DE, Zhang SC, Wang HJ, Wang XM, Zhao WZ, Su J, Bjerrum CJ, Haxen ER, Hammarlund EU (2018) A Mesoproterozoic iron formation. Proceedings of the National Academy of Sciences of the United States of America 115: E3895-E3904. DOI: 10.1073/pnas.1720529115 (04.18)

668

Bristow LA (2018) Anoxia in the snow. Nature Geoscience 11: 226-227 DOI: 10.1038/s41561-018-0088-6 (04.18)

669

Callbeck CM, Lavik G, Ferdelman TG, Fuchs B, Gruber-Vodicka HR, Hach PF, Littmann S, schoffelen NJ, Kalvelage T, Thomsen S, Schunck H, Löscher CR, Schmitz RA, Kuypers MMM (2018) Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria. Nature Communications 9, 1729. DOI: 10.1038/s41467-018-04041-x (04.18) OA

670

Raiswell R, Hardisty DS, Lyons TW, Canfield DE, Owens JD, Planavsky NJ, Poulton SW, Reinhard CT (2018) The iron paleoredox proxies: A guide to the pitfalls, problems and proper practice. American Journal of Science 318: 491-526. DOI: 10.2475/05.2018.03 (05.18) OA

671

Boyle RA, Dahl TW, Bjerrum CJ, Canfield DE (2018) Bioturbation and directionality in Earth’s carbon isotope record across the Neoproterozoic-Cambrian transition. Geobiology 16: 252-278. DOI: 10.1111/gbi.12277 (05.18)

672

Hammarlund EU (2018) Valuable snapshots of deep time. Nature Geoscience 11: 298-299. DOI: 10.1038/s41561-018-0118-4 (05.18)

673

Rotaru A-E, Calabrese F, Stryhanyuk H, Musat F, Shrestha PM, Weber HS, Snoeyenbos-West OLO, Hall POJ, Richnow HH, Musat N, Thamdrup B (2018) Conductive particles enable syntrophic acetate oxidation between Geobacter and Methanosarcina from coastal sediments. mBio 9:e00226-18. https://doi.org/10.1128/mBio.00226-18. (05.18)

674

Chi Fru E, Kilias S, Ivarsson M, Rattray JE, Gkika K, McDonald I, He Q, Broman C (2018) Sedimentary mechanisms of a modern banded iron formation on Milos Island, Greece. Solid Earth 9: 573–598 (05.18) OA

675

Mills DB, Francis WR, Canfield DE (2018) Animal origins and the Tonian Earth system. Emerging Topics in Life Sciences 2: 289-298 (06.18)

676

Kamp A, Petro C, Røy H, Nielsen S, Carvalho P, Stief P, Schramm A (2018) Intracellular nitrate in sediments of an oxygen-deficient marine basin is linked to pelagic diatoms. FEMS Microbiology Ecology 94. DOI:10.1093/femsec/fiy122 (06.18)

677

Drake H, Ivarsson M, Tillberg M, Whitehouse M, Kooijman E (2018) Ancient microbial activity in deep hydraulically conductive fracture zones within the Forsmark target area for deep geological nuclear waste disposal, Sweden. Geosciences 8: 211. doi:10.3390/geosciences8060211. (06.18) OA

678

Attard KM, Søgaard DH, Piontek j, Lange BA, Katlein C, Sørensen HL, McGinnis DF, Rovelli L, Rysgaard S, Wenzhöfer F, Glud RN (2018) Oxygen fluxes beneath Arctic land-fast ice and pack ice: towards estimates of ice productivity. Polar Biology http://doi.org/10.1007/s00300-018-2350-1 (online 06.18)

679

Canfield DE, Zhang SC, Frank AB, Wang XM, Wang HJ, Su J, Ye Y Frei R (2018) Highly fractionated chromium isotopes in Mesoproterozoic-aged shales and atmospheric oxygen. Nature Communications 9: 2871. DOI: 10.1038/s41467-018-05263-9 (07.18)

680

Stief P, Lundgaard ASB, Treusch AH, Thamdrup B, Grossart H-P, Glud RN (2018) Freshwater copepod carcasses as pelagic microsites of dissimilatory nitrate reduction to ammonium. FEMS Microbiology Ecology 94: 144. DOI:10.1093/femsec/fiy144 (advance access publication date: 28 July). OA

681

Herzog M, Fukao T, Winkel A, Konnerup D, Lamichhane S, Alpuerto JP, Hasler‐Sheetal H, Pedersen O (2018) Physiology, gene expression, and metabolome of two wheat cultivars with contrasting submergence tolerance. Plant Cell & Environment 1–13. https://doi.org/10.1111/pce.13211

682

Ueki T, Nevin KP, Rotaru, AE, Wang LY, Ward JE, Woodard TL, Lovley DR (2018). Geobacter Strains Expressing Poorly Conductive Pili Reveal Constraints on Direct Interspecies Electron Transfer Mechanisms. mBio 9:e01273-18. https://doi.org/10.1128/mBio.01273-18 (07.18)

683

Vasquez-Cardenas D, Meire L, Sørensen HL, Glud RN,Meysman FJR, Boschker HTS (2018) Bacterial chemoautotrophic reoxidation in sub-Arctic sediments: A seasonal study in Kobbefjord, Greenland. Marine Ecology Progress Series 601:33-39. DOI: https://doi.org/10.3354/meps12669 (08.18)

684

Bennett WW, Lombi E, Burton ED, Johnston SG, Kappen P, Howard DL, Canfield DE (2018) Synchrotron X-ray spectroscopy for investigating vanadium speciation in marine sediment: limitation and opportunities. Journal of Analytical Atomic Spectrometry DOI:10.1039/c8ja00231b (08.18)

685

Stief P, Lundgaard ASB, Nielsen TG, Glud RN (2018): Feeding-related controls on microbial nitrogen cycling associated with the Arctic marine copepod Calanus hyperboreus. Marine Ecology Progress Series 602: 1-14 (08.18)

686

Wiesendanger R, Grimaudo V, Moreno P, Cedeῆo López A, Riedo A, Tulej M, Neubeck A, Ivarsson M, Wacey D, Wurz P (2018) Chemical and optical identification of micrometer sized 1.9 Ga old fossils with a miniature LIMS system combined with an optical microscope. Astrobiology 18 doi.org/10.1089/ast.2017.1780. (08.18)

687

Crowe SA, Cox RP, Jones C, Fowle DA, Santibanez-Bustos JF, Ulloa O, Canfield DE (2018) Decrypting the sulfur cycle in oceanic oxygen minimum zones. ISME Journal 12: 2322-2329 DOI: 10.1038/s41396-018-0149-2 (09.18)

688

Ivarsson M, Skogby H, Phichaikamjornwut B, Bengtson S, Siljeström S, Ounchanum P, Boonsong A, Kruachanta M, Marone F, Belivanova V, Holmström S (2018) Intricate tunnels in garnets from soils and river sediments in Thailand – possible endolithic microborings. PLoS ONE 13(8): e0200351. doi.org/10.1371/journal.pone.0200351. (08.18) OA

689

Wang XM, Zhao WZ, Zhang SC, Wang HJ, Su J, Canfield DE, Hammarlund EU (2018) The aerobic diagenesis of Mesoproterozoic organic matter. Scientific Reports 8: 13324. DOI: 10.1038/s41598-018-31378-6 (09.18)

690

Hammarlund EU, Smith MP, Rasmussen JA, Nielsen AT, Canfield DE, Harper DAT (2018) The Sirius Passet Lagerstätte of North Greenland – A geochemical window on early Cambrian low-oxygen environments and ecosystems. Geobiology https://doi.org/10.1111/gbi.12315 (09.18) OA

691

Chi Fru E, Callac N, Posth NR, Argyaki A, Ling Y-C, Ivarsson M, Broman C, Kilias SP (2018) Arsenic and high affinity phosphate uptake gene distribution in shallow submarine hydrothermal sediments. Biogeosciences. doi.org/10.1007/s10533-018-0500-8. First online Sept 20

692

Rovelli L, Attard KM, Heppell CM, Binley A, Trimmer M, Glud RN (2018) Headwater re-aeration quantified from O2 mass balances at the reach scale. Limnology & Oceanography: Methods 16: 696–709, doi:10.1002/lom3.10281 (10.18) OA

693

Riebesell U, Aberle-Malzahn N, Achterberg EP, Algueró-Muñiz M, Alvarez-Fernandez S, Arístegui J, Bach L, Boersma M, Boxhammer T, Guan W, Haunost M, Horn HG, Löscher CR, Ludwig A, Spisla C, Sswat M, Stange P, Taucher J (2018) Toxic algal bloom induced by ocean acidification disrupts the pelagic food web. Nature Climate Change, https://doi.org/10.1038/s41558-018-0344-1 (11.18)

694

Kumala L, Canfield DE (2018) Contraction dynamics and respiration of small single-osculum explants of the demosponge Halichondria panicea. Frontiers in Marine Science 5: 1-11. https://doi.org/10.3389/fmars.2018.00410

695

Scheller EL, Dickson AJ, Canfield DE, Korte C, Kristiansen KK, Dahl TW (2018) Ocean redox conditions between the snowballs – Geochemical constraints from Arena Formation, East Greenland. Precambrian Research 319: 173-186. https://doi.org/10.1016/j.precamres.2017.12.009 (12.18)